Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs6572812 | chr14:23324566 | C/G | 2.48E-5 | 395 | 11.17 | 15.73 | 15.83 | KM Plot |
| LGG | rs6584028 | chr10:97558779 | A/G | 0.000218 | 407 | 14.83 | 16.6 | 17.88 | KM Plot |
| LGG | rs6591654 | chr11:61219181 | T/C | 8.01E-5 | 405 | 16.68 | 17.67 | 14.5 | KM Plot |
| LGG | rs6598198 | chr12:132552494 | A/T | 2.72E-5 | 407 | 16.25 | 13.53 | 8.77 | KM Plot |
| LGG | rs6599268 | chr3:38950219 | C/T | 4.41E-5 | 407 | 15.15 | 16.42 | 11.63 | KM Plot |
| LGG | rs66631678 | chr10:910787 | A/G | 5.06E-6 | 406 | 15.02 | 17.38 | 10.57 | KM Plot |
| LGG | rs6664337 | chr1:201116754 | C/T | 5.8E-5 | 407 | 9.28 | 15.35 | 15.57 | KM Plot |
| LGG | rs66737197 | chr1:78512512 | TG/T | 8.0E-8 | 401 | 3.93 | 11.8 | 15.73 | KM Plot |
| LGG | rs6677890 | chr1:78516775 | T/G | 3.74E-7 | 399 | 1.23 | 12.03 | 15.73 | KM Plot |
| LGG | rs66797613 | chr10:1090469 | C/T | 1.84E-7 | 401 | 15.93 | 14.8 | 8.97 | KM Plot |
| LGG | rs6686230 | chr1:78496696 | C/T | 3.55E-7 | 404 | 3.93 | 10.63 | 15.73 | KM Plot |
| LGG | rs6688082 | chr1:169625807 | C/T | 2.45E-11 | 403 | 15.17 | 18.03 | 5.93 | KM Plot |
| LGG | rs6693640 | chr1:219160601 | C/A | 0.000178 | 407 | 14.77 | 18.8 | 18.63 | KM Plot |
| LGG | rs6694122 | chr1:201121523 | T/C | 3.89E-5 | 402 | 9.28 | 15.63 | 15.3 | KM Plot |
| LGG | rs66943509 | chr10:929724 | AC/A | 4.94E-6 | 406 | 15.17 | 16.38 | 10.57 | KM Plot |